Nipponbare / Koshihikari // Koshihikari Backcross Inbred Lines (BILs) 127 linesThis mapping population consists of 127 backcross inbred lines (BILs) developed from backcrosses of rice varieties Nipponbare / Koshihikari // Koshihikari by the single-seed descent method. The genotype of each line was determined using 111 DNA markers(102 SSRs and 9 SNPs) distributed along the 12 rice chromosomes. The linkage map may serve as a framework for mapping of additional DNA markers and can be useful in analysis of other QTLs.
| Genotype data | PDF(103K) | EXCEL(226K) |
A physical position of each marker (position on the genome) is based on IRGSP build 4.0.
<Reference>
Matsubara K, Kono I, Hori K, Nonoue Y, Ono N, Shomura A, Mizubayashi T,Yamamoto S, Yamanouchi U, Shirasawa K, Nishio T, Yano M (2008) Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbredlines from crosses between japonica rice cultivars. Theor. Appl. Genet. 117(6):935-945.
(http://dx.doi.org/10.1007/s00122-008-0833-0).
An additional 687 DNA markers (49 SSRs and 638 SNPs) were added in the genotype of each line.
| Genotype data | PDF(7.9M) | EXCEL(387K) |
A physical position of each marker (position on the genome) is based on IRGSP build 4.0.
<Reference>
Hori K, Kataoka T, Miura K, Yamaguchi M, Saka N, Nakahara T, Sunohara Y, Ebana K, Yano M. (2012) Variation in heading date conceals quantitative trait loci for other traits of importance in breeding selection of rice. Breed Sci. 62(3): 223-234.
(https://www.jstage.jst.go.jp/article/jsbbs/62/3/62_223/_article)
| | Parent Variety | | | N/K BIL98 | | | N/K CSSL54 | | | A/K DHL212 | | | I/K RIL116 | | |
| | | K/K BIL182 | | | K/K CSSL39 | | | | | | | |||
| | | K/H//K BIL93 | | | K/N CSSL44 | | | | | | | |||
| | | S/H BIL85 | | | S/H CSSL39 | | | | | | | |||
| | | N/K//K BIL127 | | | N/K//K CSSL41 | | | | | | | |||
| | | N/K//N BIL79 | | | N/K//N CSSL48 | | | | | | | |||
| | | J/K//K BIL95 | | | K/IR//K CSSL42 | | | | | | | |||
| | | | | K/IR//IR CSSL40 | | | | | | |