Nipponbare / Kasalath Chromosome Segment Substitution Lines (CSSLs) 54 lines


These plant materials consist of 54 chromosome segment substitution lines (CSSLs) developed from backcrosses of rice varieties Nipponbare / Kasalath. The genotype of each line was determined using 214 RFLP markers distributed along the 12 rice chromosomes. These CSSLs can be used as a permanent mapping population and can also be useful for QTL mapping of many traits.

Genotype data  PDF(44K)  EXCEL(180K)
'A' represents a homozygous allele for Nipponbare, 'B' for Kasalath, and 'H' for a heterozygous allele.

RGP genetic map:
http://rgp.dna.affrc.go.jp/E/publicdata/geneticmap2000/
| Parent Variety | N/K BIL98 | N/K CSSL54 | A/K DHL212 | I/K RIL116 |
| K/K BIL182 | K/K CSSL39 | | |
| K/H//K BIL93 | K/N CSSL44 | | |
| S/H BIL85 | S/H CSSL39 | | |
| N/K//K BIL127 | N/K//K CSSL41 | | |
| N/K//N BIL79 | N/K//N CSSL48 | | |
| J/K//K BIL95 | K/IR//K CSSL42 | | |
| | K/IR//IR CSSL40 | | |
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